High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner (Q28541555)

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English	High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner	scientific article

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instance of

scholarly article

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title

High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner (English)

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main subject

cell line

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whole genome sequencing

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based on heuristic

inferred from title

author

Sudhir Varma

object named as

Sudhir Varma

series ordinal

1

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William Reinhold

object named as

William C Reinhold

series ordinal

5

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Yves Pommier

series ordinal

2

object named as

Yves Pommier

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author name string

Margot Sunshine

series ordinal

3

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John N Weinstein

series ordinal

4

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language of work or name

English

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publication date

2014

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published in

PLOS One

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volume

9

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issue

3

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page(s)

e92047

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copyright license

Creative Commons CC0 License

start time

26 March 2014

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stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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describes a project that uses

MDA-MB-231

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MCF-7

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HCT 116

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HT-29

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SW620

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A-549

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SK-OV-3

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MDA-MB-435

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M14

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DU145

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786-O

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A-498

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ACHN

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BT-549

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Caki-1

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CCRF-CEM

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COLO 205

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DU145/RC0.1

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EKVX

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HCC2998

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HCT 15

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HOP-62

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HOP-92

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Hs 578T

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IGROV-1

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KM12

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LOX-IMVI

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Malme-3M

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MDA-N

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MOLT-4

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NCI-ADR-RES

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NCI-H226

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NCI-H23

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NCI-H322M

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NCI-H460

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NCI-H522

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OVCAR-3

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OVCAR-4

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OVCAR-5

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OVCAR-8

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RPMI-8226

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RXF 393L

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SF268

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SF295

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SF539

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SK-MEL-2

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SK-MEL-28

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SK-MEL-5

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SN12C

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SNB-19

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SNB-75

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SR

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T-47D

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U-251MG

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UACC-257

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UACC-62

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UO-31

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HL-60

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K-562

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PC-3

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TK-10

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cites work

Genome-wide mRNA and microRNA profiling of the NCI 60 cell-line screen and comparison of FdUMP[10] with fluorouracil, floxuridine, and topoisomerase 1 poisons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

19 March 2017

Exon array analyses across the NCI-60 reveal potential regulation of TOP1 by transcription pausing at guanosine quartets in the first intron

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

19 March 2017

BLAST+: architecture and applications

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

19 March 2017

A multidrug resistance transporter from human MCF-7 breast cancer cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

19 March 2017

Deletion of p16 and p15 genes in brain tumors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

19 March 2017

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

7 April 2017

Systematic identification of genomic markers of drug sensitivity in cancer cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

7 April 2017

Targeting multidrug resistance in cancer

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

7 April 2017

Circular binary segmentation for the analysis of array-based DNA copy number data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

7 April 2017

The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Gene expression and protein array studies of folliculin-regulated pathways

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Mass homozygotes accumulation in the NCI-60 cancer cell lines as compared to HapMap Trios, and relation to fragile site location

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

EIF2C is overexpressed and amplified in head and neck squamous cell carcinoma

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Novel 47.5-kb deletion in RAB27A results in severe Griscelli Syndrome Type 2.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Analysis of Food and Drug Administration-approved anticancer agents in the NCI60 panel of human tumor cell lines

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

mRNA and microRNA expression profiles of the NCI-60 integrated with drug activities

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Global associations between copy number and transcript mRNA microarray data: an empirical study.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Array comparative genomic hybridization copy number profiling: a new tool for translational research in solid malignancies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Aneuploidy: instigator and inhibitor of tumorigenesis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Spotlight on molecular profiling: "Integromic" analysis of the NCI-60 cancer cell lines

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Array CGH technologies and their applications to cancer genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Predicting drug sensitivity and resistance: profiling ABC transporter genes in cancer cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Alteration in copy numbers of genes as a mechanism for acquired drug resistance

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Transcriptomic analysis of the NCI-60 cancer cell lines

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Karyotypic complexity of the NCI-60 drug-screening panel.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

The basic and clinical implications of ABC transporters, Y‐box‐binding protein‐1 (YB‐1) and angiogenesis‐related factors in human malignancies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

'Omic' and hypothesis-driven research in the molecular pharmacology of cancer

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

29 September 2017

Amplification of oncogenes in human cancer cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966786

retrieved

3 June 2018

Cell lines battle cancer

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0092047

retrieved

21 January 2018

Increasing genomic instability during premalignant neoplastic progression revealed through high resolution array-CGH

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/24670534

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silence of chromosomal amplifications in colon cancer

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/24670534

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Homozygous loss of the cyclin-dependent kinase 4-inhibitor (p16) gene in human leukemias

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/24670534

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0092047

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stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2737710

ADS bibcode

2014PLoSO...992047V

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OpenCitations bibliographic resource ID

2737710

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2737710

PMC publication ID

3966786

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2737710

PubMed publication ID

24670534

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2737710

ResearchGate publication ID

261137854

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