Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation (Q28559072)

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English	Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation	scientific article

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Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation (English)

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Phanerochaete chrysosporium

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Phanerochaete chrysosporium

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based on heuristic

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Ayyappa Kumar Sista Kameshwar

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Ayyappa Kumar Sista Kameshwar

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2

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Wensheng Qin

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publication date

2017

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International Journal of Biological Sciences

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13

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1

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85-99

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describes a project that uses

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/5264264

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inferred from PubMed Central ID database lookup

Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation

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19 March 2017

Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood

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19 March 2017

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

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19 March 2017

Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components

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19 March 2017

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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19 March 2017

Fungal bioconversion of lignocellulosic residues; opportunities & perspectives

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

19 March 2017

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

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19 March 2017

Characterization of the Wsc1 protein, a putative receptor in the stress response of Saccharomyces cerevisiae

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19 March 2017

Sugar transporters from bacteria, parasites and mammals: structure-activity relationships

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19 March 2017

Major facilitator superfamily

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19 March 2017

Biomass recalcitrance: engineering plants and enzymes for biofuels production

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7 April 2017

Java Treeview--extensible visualization of microarray data

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7 April 2017

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7 April 2017

limma powers differential expression analyses for RNA-sequencing and microarray studies

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7 April 2017

The carbohydrate-active enzymes database (CAZy) in 2013

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7 April 2017

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7 April 2017

Glycosyltransferases: structures, functions, and mechanisms

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7 April 2017

Substrate specificity and regioselectivity of fungal AA9 lytic polysaccharide monooxygenases secreted by Podospora anserina

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29 September 2017

Transcriptomic responses of Phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase

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29 September 2017

Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium

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29 September 2017

Robustly detecting differential expression in RNA sequencing data using observation weights

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29 September 2017

MycoCosm portal: gearing up for 1000 fungal genomes.

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29 September 2017

Regulation of cellulase and hemicellulase gene expression in fungi

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29 September 2017

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

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29 September 2017

Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

29 September 2017

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

29 September 2017

Novel enzymes for the degradation of cellulose

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29 September 2017

Microbial carbohydrate esterases deacetylating plant polysaccharides

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29 September 2017

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

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29 September 2017

The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose.

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29 September 2017

FungiDB: an integrated functional genomics database for fungi

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29 September 2017

Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species

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29 September 2017

Plant cell walls

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29 September 2017

Glycoside hydrolases: catalytic base/nucleophile diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

29 September 2017

Biosynthesis of pectin

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29 September 2017

Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

29 September 2017

Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

29 September 2017

How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation

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29 September 2017

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

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29 September 2017

Substrate pretreatment: the key to effective enzymatic hydrolysis of lignocellulosics?

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29 September 2017

Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina.

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29 September 2017

The structure and synthesis of the fungal cell wall

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29 September 2017

Cellulose synthesis in higher plants

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29 September 2017

Carbohydrate binding modules: biochemical properties and novel applications

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29 September 2017

Transcriptional regulation of plant cell wall degradation by filamentous fungi

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29 September 2017

Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate

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29 September 2017

Sophorose as an inducer of cellulase in Trichoderma viride

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29 September 2017

Regulation of gene expression in industrial fungi: Trichoderma.

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29 September 2017

Biodegradation and biological treatments of cellulose, hemicellulose and lignin: an overview

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29 September 2017

Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei

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29 September 2017

Polysaccharide lyases

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29 September 2017

Mechanism by which cellulose triggers cellobiohydrolase I gene expression in Trichoderma reesei

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29 September 2017

Regulatory aspects of cellulase biosynthesis and secretion

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29 September 2017

Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium

1 reference

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3 June 2018

Cellulase induction in Trichoderma reesei by cellulose requires its own basal expression

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3 June 2018

Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis

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3 June 2018

Induction of cellulose- and xylan-degrading enzyme systems in Aspergillus terreus by homo- and heterodisaccharides composed of glucose and xylose

1 reference

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3 June 2018

Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis.

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20 June 2018

Enzymatic xylose release from pretreated corn bran arabinoxylan: differential effects of deacetylation and deferuloylation on insoluble and soluble substrate fractions

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27 November 2018

FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Xyr1 receives the lactose induction signal and regulates lactose metabolism in Hypocrea jecorina.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

D-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Differential transcription of beta-glucosidase and cellobiose dehydrogenase genes in cellulose degradation by the basidiomycete Phanerochaete chrysosporium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Why are there so many carbohydrate-active enzyme-related genes in plants?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Molecular characterization of a novel beta-1,3-exoglucanase related to mycoparasitism of Trichoderma harzianum

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5264264

27 November 2018

Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei

1 reference

https://pubmed.ncbi.nlm.nih.gov/28123349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei

1 reference

https://pubmed.ncbi.nlm.nih.gov/28123349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synergistic action of xylanase and mannanase improves the total hydrolysis of softwood

1 reference

https://pubmed.ncbi.nlm.nih.gov/28123349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Triggering of cellulase biosynthesis by cellulose in Trichoderma reesei. Involvement of a constitutive, sophorose-inducible, glucose-inhibited beta-diglucoside permease

1 reference

https://pubmed.ncbi.nlm.nih.gov/28123349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.7150/IJBS.17390

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