Pseudofam: the pseudogene families database (Q28754290)

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scientific article (publication date: 2009)

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Language	Label	Description	Also known as
English	Pseudofam: the pseudogene families database	scientific article (publication date: 2009)

Statements

instance of

scholarly article

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title

Pseudofam: the pseudogene families database (English)

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main subject

database

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author

Mark Bender Gerstein

series ordinal

7

object named as

Mark B Gerstein

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author name string

Hugo Y K Lam

series ordinal

1

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Ekta Khurana

series ordinal

2

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Gang Fang

series ordinal

3

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Philip Cayting

series ordinal

4

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Nicholas Carriero

series ordinal

5

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Kei-Hoi Cheung

series ordinal

6

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language of work or name

English

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publication date

January 2009

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published in

Nucleic Acids Research

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volume

37

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issue

Database issue

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page(s)

D738-43

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cites work

PseudoGeneQuest - service for identification of different pseudogene types in the human genome

1 reference

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PubMed Central

reference URL

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16 March 2017

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

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PubMed Central

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retrieved

16 March 2017

Ensembl 2008

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

16 March 2017

Systematic identification of pseudogenes through whole genome expression evidence profiling

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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16 March 2017

Genome-wide survey for biologically functional pseudogenes

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

16 March 2017

Pfam: clans, web tools and services

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

16 March 2017

Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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16 March 2017

The EMBL Nucleotide Sequence Database

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PubMed Central

reference URL

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retrieved

16 March 2017

The Pfam protein families database.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

16 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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16 March 2017

Basic local alignment search tool

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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16 March 2017

Large-scale analysis of the human and mouse transcriptomes

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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7 April 2017

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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3 June 2018

Asymmetric histone modifications between the original and derived loci of human segmental duplications

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PubMed Central

reference URL

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3 June 2018

The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events?

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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3 June 2018

The real life of pseudogenes

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKN758

retrieved

21 January 2018

Primate segmental duplications: crucibles of evolution, diversity and disease

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

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3 June 2018

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Human housekeeping genes are compact

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Nature and structure of human genes that generate retropseudogenes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

Comparison of DNA sequences with protein sequences.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686518

retrieved

3 June 2018

PseudoPipe: an automated pseudogene identification pipeline

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKN758

retrieved

21 January 2018

A translation approach to portable ontology specifications

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1093%2FNAR%2FGKN758

retrieved

21 January 2018

Identifiers

DOI

10.1093/NAR/GKN758

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DBLP publication ID

journals/nar/LamKFCCCG09

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

2686518

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PubMed publication ID

18957444

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ResearchGate publication ID

23425141

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