Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. (Q35052576)

6 August 2017

title

Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. (English)

1 reference

6 August 2017

Kazushi Suzuki

1

1 reference

6 August 2017

Paul Babitzke

series ordinal

2

1 reference

6 August 2017

Sidney R Kushner

series ordinal

3

1 reference

6 August 2017

Tony Romeo

series ordinal

4

1 reference

6 August 2017

publication date

1 September 2006

1 reference

6 August 2017

1 reference

6 August 2017

volume

20

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6 August 2017

issue

18

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6 August 2017

page(s)

2605-2617

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Bacterial small-molecule signaling pathways

6 August 2017

cites work

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CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.

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RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Structural basis of activity and allosteric control of diguanylate cyclase

8 July 2018

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A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa

8 July 2018

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The small RNA regulators of Escherichia coli: roles and mechanisms*

8 July 2018

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HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis

8 July 2018

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GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility

8 July 2018

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Cyclic di-GMP as a bacterial second messenger.

8 July 2018

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Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E.

8 July 2018

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Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1.

8 July 2018

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The pgaABCD locus of Escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation

8 July 2018

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Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain

8 July 2018

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Cyclic di-guanosine-monophosphate comes of age: a novel secondary messenger involved in modulating cell surface structures in bacteria?

8 July 2018

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GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host

8 July 2018

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RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli

8 July 2018

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

8 July 2018

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A novel sRNA component of the carbon storage regulatory system of Escherichia coli

8 July 2018

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The Escherichia coli BarA-UvrY two-component system is needed for efficient switching between glycolytic and gluconeogenic carbon sources.

8 July 2018

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Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP

8 July 2018

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Mutational analysis of a conserved signal-transducing element: the HAMP linker of the Escherichia coli nitrate sensor NarX

8 July 2018

1 reference

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Regulatory circuitry of the CsrA/CsrB and BarA/UvrY systems of Escherichia coli

8 July 2018

1 reference

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mRNA decay in Escherichia coli comes of age.

8 July 2018

1 reference

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The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Biofilm formation and dispersal under the influence of the global regulator CsrA of Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Molecular characterization of global regulatory RNA species that control pathogenicity factors in Erwinia amylovora and Erwinia herbicola pv. gypsophilae.

8 July 2018

1 reference

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RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

GGDEF domain is homologous to adenylyl cyclase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

6S RNA regulates E. coli RNA polymerase activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

8 July 2018

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An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

8 July 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

The global regulator CsrA of Escherichia coli is a specific mRNA-binding protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

The RNA Molecule CsrB Binds to the Global Regulatory Protein CsrA and Antagonizes Its Activity in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

A protein complex mediating mRNA degradation in Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Polyadenylylation helps regulate mRNA decay in Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1578682

Pleiotropic regulation of central carbohydrate metabolism in Escherichia coli via the gene csrA.

8 July 2018

1 reference

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Complete analysis of cellular nucleotides by two-dimensional thin layer chromatography

8 July 2018

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Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12

8 July 2018

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7 Uses of transposons with emphasis on Tn10

8 July 2018

1 reference

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Physiological regulation of a decontrolled lac operon

8 July 2018

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CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli.

8 July 2018

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25 October 2018

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Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.

25 October 2018

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Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli

25 October 2018

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The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.

25 October 2018

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Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation

25 October 2018

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25 October 2018

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Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay

25 October 2018

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Proteomic analysis of the cell envelope fraction of Escherichia coli

25 October 2018

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CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli.

25 October 2018

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A two-component regulator induces the transmission phenotype of stationary-phase Legionella pneumophila.

25 October 2018

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RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.

25 October 2018

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Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

25 October 2018

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12 December 2020

RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters

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12 December 2020

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12 December 2020

Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB

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12 December 2020

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

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12 December 2020

Identifiers

DOI

10.1101/GAD.1461606

1 reference

6 August 2017

1 reference

6 August 2017

1 reference