Intron gain and loss in segmentally duplicated genes in rice (Q35605929)

9 August 2017

title

Intron gain and loss in segmentally duplicated genes in rice (English)

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9 August 2017

Haining Lin

1

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9 August 2017

Wei Zhu

2

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9 August 2017

Joana C Silva

3

1 reference

9 August 2017

Xun Gu

4

1 reference

9 August 2017

C Robin Buell

5

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9 August 2017

publication date

23 May 2006

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9 August 2017

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9 August 2017

volume

7

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9 August 2017

issue

5

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9 August 2017

page(s)

R41

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The map-based sequence of the rice genome

9 August 2017

cites work

1 reference

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12 July 2018

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Rates of intron loss and gain: implications for early eukaryotic evolution

12 July 2018

1 reference

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Conservation versus parallel gains in intron evolution

12 July 2018

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12 July 2018

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The pattern of intron loss

12 July 2018

1 reference

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Patterns of intron gain and loss in fungi

12 July 2018

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Preferential loss and gain of introns in 3' portions of genes suggests a reverse-transcription mechanism of intron insertion

12 July 2018

1 reference

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Worm genomes hold the smoking guns of intron gain

12 July 2018

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Prevalence of intron gain over intron loss in the evolution of paralogous gene families

12 July 2018

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Origins of recently gained introns in Caenorhabditis

12 July 2018

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A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution

12 July 2018

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Building genomic profiles for uncovering segmental homology in the twilight zone

12 July 2018

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

12 July 2018

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Enrichment of gene-coding sequences in maize by genome filtration

12 July 2018

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Genomic characterization of Rim2/Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome.

12 July 2018

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12 July 2018

Mystery of intron gain

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Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

12 July 2018

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12 July 2018

1 reference

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Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain

12 July 2018

1 reference

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On biased distribution of introns in various eukaryotes

12 July 2018

1 reference

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Large-scale comparison of intron positions among animal, plant, and fungal genes

12 July 2018

1 reference

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Ab initio gene finding in Drosophila genomic DNA

12 July 2018

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The recent origins of spliceosomal introns revisited

12 July 2018

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12 July 2018

1 reference

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Introns and reading frames: correlation between splicing sites and their codon positions

12 July 2018

1 reference

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Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

12 July 2018

1 reference

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SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis

12 July 2018

1 reference

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Evolution of the intron-exon structure of eukaryotic genes

12 July 2018

1 reference

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On the ancient nature of introns

12 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

12 July 2018

1 reference

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A single-base change at a splice site in a beta 0-thalassemic gene causes abnormal RNA splicing

12 July 2018

1 reference

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Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

12 July 2018

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Exon mutations uncouple 5' splice site selection from U1 snRNA pairing.

12 July 2018

1 reference

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Analysis of nonuniformity in intron phase distribution

12 July 2018

1 reference

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Duplication and DNA segmental loss in the rice genome: implications for diploidization.

12 July 2018

1 reference

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DAGchainer: a tool for mining segmental genome duplications and synteny

25 September 2018

1 reference

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Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites

25 September 2018

1 reference

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The evolutionary gain of spliceosomal introns: sequence and phase preferences

25 September 2018

1 reference

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Evidence that rice and other cereals are ancient aneuploids

25 September 2018

1 reference

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Models of amino acid substitution and applications to mitochondrial protein evolution.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779517

Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779517

Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns

25 September 2018

1 reference

12 December 2020

Ancestral genome duplication in rice

1 reference

12 December 2020

How Mammalian RNA Returns to Its Genome

1 reference

12 December 2020

Pseudogenes in yeast?

1 reference

12 December 2020

The exon theory of genes

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2006-7-5-R41

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Dimensions Publication ID

9 August 2017

0 references

1 reference

9 August 2017

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