The weird and wonderful world of bacterial ribosome regulation. (Q36846903)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

review article

1 reference

title

The weird and wonderful world of bacterial ribosome regulation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

1

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31 December 2019

author name string

Knud H Nierhaus

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

publication date

1 May 2007

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

Critical Reviews in Biochemistry and Molecular Biology

31 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

volume

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

page(s)

187-219

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17562451%20AND%20SRC:MED&resulttype=core&format=json

A protein residing at the subunit interface of the bacterial ribosome

31 December 2019

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A novel ribosome-associated protein is important for efficient translation in Escherichia coli

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Crystal structure of an initiation factor bound to the 30S ribosomal subunit

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CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit

21 January 2018

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The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli.

21 January 2018

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The mediator for stringent control, ppGpp, binds to the beta-subunit of Escherichia coli RNA polymerase

21 January 2018

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Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif

21 January 2018

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RelE, a global inhibitor of translation, is activated during nutritional stress

21 January 2018

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Cross-linking in the Living Cell Locates the Site of Action of Oxazolidinone Antibiotics

21 January 2018

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Non-ribosomal factors in ribosome subunit assembly are emerging targets for new antibacterial drugs

21 January 2018

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Shutdown decay of mRNA.

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Ribosomal protection proteins and their mechanism of tetracycline resistance

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Mechanism of Tet(O)-mediated tetracycline resistance

21 January 2018

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The tetracycline resistance protein Tet(o) perturbs the conformation of the ribosomal decoding centre

21 January 2018

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A phylogenetic approach to target selection for structural genomics: solution structure of YciH

21 January 2018

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Studies of the interaction of Escherichia coli YjeQ with the ribosome in vitro

21 January 2018

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YjeQ, an essential, conserved, uncharacterized protein from Escherichia coli, is an unusual GTPase with circularly permuted G-motifs and marked burst kinetics

21 January 2018

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A cold-sensitive mutation in 16S rRNA provides evidence for helical switching in ribosome assembly

21 January 2018

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Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA.

21 January 2018

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A new essential gene of the 'minimal genome' affecting cell division.

21 January 2018

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The yeast GTPase Mtg2p is required for mitochondrial translation and partially suppresses an rRNA methyltransferase mutant, mrm2

21 January 2018

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Exoribonucleases and their multiple roles in RNA metabolism

21 January 2018

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Ribosome synthesis meets the cell cycle

21 January 2018

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21 January 2018

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21 January 2018

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The ribosomal subunit assembly line.

21 January 2018

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21 January 2018

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The activity of ribosome modulation factor during growth of Escherichia coli under acidic conditions.

21 January 2018

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The influence of ribosome modulation factor on the survival of stationary-phase Escherichia coli during acid stress

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Stimulation of peptidyltransferase reactions by a soluble protein.

21 January 2018

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Identification of a soluble protein that stimulates peptide bond synthesis

21 January 2018

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Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein

21 January 2018

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Initiation of mRNA translation in prokaryotes

21 January 2018

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The pseudouridine synthase RluD is required for normal ribosome assembly and function in Escherichia coli

21 January 2018

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Dial tm for rescue: tmRNA engages ribosomes stalled on defective mRNAs

21 January 2018

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Active site in RrmJ, a heat shock-induced methyltransferase

21 January 2018

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Crystal structure of elongation factor P from Thermus thermophilus HB8

21 January 2018

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SmpB functions in various steps of trans-translation

21 January 2018

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High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

21 January 2018

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Synthesis of Guanosine Tetra- and Pentaphosphate Requires the Presence of a Codon-Specific, Uncharged Transfer Ribonucleic Acid in the Acceptor Site of Ribosomes

21 January 2018

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MSI and MSII made on ribosome in idling step of protein synthesis

21 January 2018

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A novel GTPase activated by the small subunit of ribosome.

21 January 2018

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The ribosome-recycling step: consensus or controversy?

21 January 2018

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Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli

21 January 2018

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The tandem GTPase, Der, is essential for the biogenesis of 50S ribosomal subunits in Escherichia coli.

21 January 2018

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Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli.

21 January 2018

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Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli.

21 January 2018

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DEAD-box RNA helicases in Escherichia coli

21 January 2018

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Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase

21 January 2018

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The NOG1 GTP-binding protein is required for biogenesis of the 60 S ribosomal subunit

21 January 2018

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Characterization of the tRNA and ribosome-dependent pppGpp-synthesis by recombinant stringent factor from Escherichia coli

21 January 2018

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The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly

21 January 2018

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Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli

21 January 2018

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Temperature sensitivity caused by mutant release factor 1 is suppressed by mutations that affect 16S rRNA maturation

21 January 2018

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The YrdC protein--a putative ribosome maturation factor

21 January 2018

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The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively

21 January 2018

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YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain

21 January 2018

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SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

21 January 2018

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A new mechanism for chloramphenicol, florfenicol and clindamycin resistance: methylation of 23S ribosomal RNA at A2503.

21 January 2018

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Crystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution

21 January 2018

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GUF1, a gene encoding a novel evolutionarily conserved GTPase in budding yeast

21 January 2018

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Structural aspects of the inhibition of DNase and rRNase colicins by their immunity proteins

21 January 2018

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Hsp15: a ribosome-associated heat shock protein

21 January 2018

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Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.

21 January 2018

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Universally conserved translation initiation factors

21 January 2018

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Initiation of protein synthesis in bacteria

21 January 2018

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Classification and evolution of P-loop GTPases and related ATPases

21 January 2018

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21 January 2018

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Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.

21 January 2018

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Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.

21 January 2018

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The crystal structure of YloQ, a circularly permuted GTPase essential for Bacillus subtilis viability

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701360843

RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701360843

The Caulobacter crescentus CgtAC protein cosediments with the free 50S ribosomal subunit

21 January 2018

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Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes

21 January 2018

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Methylation of 23S rRNA nucleotide G745 is a secondary function of the RlmAI methyltransferase

21 January 2018

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The Cfr rRNA methyltransferase confers resistance to Phenicols, Lincosamides, Oxazolidinones, Pleuromutilins, and Streptogramin A antibiotics

21 January 2018

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The PRC-barrel domain of the ribosome maturation protein RimM mediates binding to ribosomal protein S19 in the 30S ribosomal subunits

21 January 2018

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The DnaK chaperone system facilitates 30S ribosomal subunit assembly.

21 January 2018

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Phylogenetic distribution of translational GTPases in bacteria

21 January 2018

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chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The Small Subunit rRNA Modification Database

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701360843

Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis

21 January 2018

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The essential GTPase YphC displays a major domain rearrangement associated with nucleotide binding

21 January 2018

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The 160-Kilobase Genome of the Bacterial Endosymbiont Carsonella

21 January 2018

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The assembly of prokaryotic ribosomes

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosome modulation factor protects Escherichia coli during heat stress, but this may not be dependent on ribosome dimerisation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Regulation of the synthesis of ribosomes and ribosomal components

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Is hypusine essential for eukaryotic cell proliferation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Solution structure of HI0257, a bacterial ribosome binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

YsxC, a putative GTP-binding protein essential for growth of Bacillus subtilis 168.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The highly conserved LepA is a ribosomal elongation factor that back-translocates the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Localization of the stringent protein of Escherichia coli on the 50S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosome structure and the mechanism of translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Regulation of the stringent response is the essential function of the conserved bacterial G protein CgtA in Vibrio cholerae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Genome-wide expression profiling in Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Stringent factor from Escherichia coli directs ribosomal binding and release of uncharged tRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Resistance to tetracycline, macrolide-lincosamide-streptogramin, trimethoprim, and sulfonamide drug classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Update on acquired tetracycline resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Domain arrangement of Der, a switch protein containing two GTPase domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The RNA Modification Database: 1999 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Analysis of the open and closed conformations of the GTP-binding protein YsxC from Bacillus subtilis.

21 January 2018

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Interfering with Different Steps of Protein SynthesisExplored by Transcriptional Profiling of Escherichia coli K-12

21 January 2018

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tmRNA and associated ligands: a puzzling relationship.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The GTP binding protein Obg homolog ObgE is involved in ribosome maturation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Multiple GTPases participate in the assembly of the large ribosomal subunit in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structures of the bacterial ribosome at 3.5 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Identification of Escherichia coli m2G methyltransferases: II. The ygjO gene encodes a methyltransferase specific for G1835 of the 23 S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Cell-free translation reconstituted with purified components

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Biochemical properties of the Vibrio harveyi CgtAV GTPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The Vibrio harveyi GTPase CgtAV is essential and is associated with the 50S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ordered processing of Escherichia coli 23S rRNA in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Localization of the ribosomal protection protein Tet(O) on the ribosome and the mechanism of tetracycline resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

More than one way to skin a cat: translational autoregulation by ribosomal protein S15.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structure of Hsp15 reveals a novel RNA-binding motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

A genetic locus for the regulation of ribonucleic acid synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Identification of the synthesis of guanosine tetraphosphate (MS I) as insertion of a pyrophosphoryl group into the 3'-position in guanosine 5'-diphosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Overexpression of two different GTPases rescues a null mutation in a heat-induced rRNA methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Regulatory nascent peptides in the ribosomal tunnel

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The structure of theyrdCgene product fromEscherichia colireveals a new fold and suggests a role in RNA binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Protein L16 induces a conformational change when incorporated into an L16-deficient core derived from Escherichia coli ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Modulation of RNA polymerase specificity by ppGpp

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The avilamycin resistance determinants AviRa and AviRb methylate 23S rRNA at the guanosine 2535 base and the uridine 2479 ribose

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosomal protection from tetracycline mediated by Tet(O): Tet(O) interaction with ribosomes is GTP-dependent.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The essential GTPase RbgA (YlqF) is required for 50S ribosome assembly in Bacillus subtilis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The mechanism of action of ppGpp on rRNA synthesis in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structural basis for the control of translation initiation during stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Growth phase coupled modulation of Escherichia coli ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Dissection of the mechanism for the stringent factor RelA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Species-specific antibiotic-ribosome interactions: implications for drug development

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The how and Y of cold shock.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The E-site story: the importance of maintaining two tRNAs on the ribosome during protein synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

In vitro assembly of 30S ribosomal particles from precursor 16S RNA of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The plastid ribosomal proteins. Identification of all the proteins in the 30 S subunit of an organelle ribosome (chloroplast).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Involvement of the N terminus of ribosomal protein L11 in regulation of the RelA protein of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of hyperthermophilic archaeal initiation factor 5A: a homologue of eukaryotic initiation factor 5A (eIF-5A)

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

The ribosome modulation factor (RMF) binding site on the 100S ribosome of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

RMF inactivates ribosomes by covering the peptidyl transferase centre and entrance of peptide exit tunnel

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Crystal structure of the ribosome at 5.5 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Guanine nucleotides stabilize the binding of Bacillus subtilis Obg to ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Translational Operator of mRNA on the Ribosome: How Repressor Proteins Exclude Ribosome Binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843

Stepping Transfer Messenger RNA through the Ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701360843