Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions (Q37132787)

18 August 2017

Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions (English)

1 reference

18 August 2017

1 reference

Davis Jose

1

1 reference

18 August 2017

Kausiki Datta

series ordinal

2

1 reference

18 August 2017

Neil P Johnson

series ordinal

3

1 reference

18 August 2017

Peter H von Hippel

series ordinal

4

1 reference

18 August 2017

language of work or name

English

0 references

publication date

25 February 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

18 August 2017

1 reference

18 August 2017

106

1 reference

18 August 2017

11

1 reference

18 August 2017

4231-4236

1 reference

DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer-template junction

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Ultrafast dynamics in DNA: "fraying" at the end of the helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolo-cytosine

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Interactions of the KWK6 cationic peptide with short nucleic acid oligomers: demonstration of large Coulombic end effects on binding at 0.1-0.2 M salt

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Helicase mechanisms and the coupling of helicases within macromolecular machines. Part I: Structures and properties of isolated helicases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

A general model for nucleic acid helicases and their "coupling" within macromolecular machines

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

2-Aminopurine fluorescence quenching and lifetimes: role of base stacking

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Thermodynamic parameters for DNA sequences with dangling ends

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Melting of a DNA helix terminus within the active site of a DNA polymerase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Synthesis and properties of defined DNA oligomers containing base mispairs involving 2-aminopurine

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Formaldehyde as a probe of DNA structure. 4. Mechanism of the initial reaction of formaldehyde with DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Dynamics of mismatched base pairs in DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

The dynamic structural basis of differential enhancement of conformational stability by 5'- and 3'-dangling ends in RNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2657408

Hydrogen exchange as a probe of the dynamic structure of DNA. I. General acid-base catalysis

3 September 2018

1 reference

12 December 2020

Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine

1 reference

12 December 2020

Energetics of DNA end binding by E.coli RecBC and RecBCD helicases indicate loop formation in the 3'-single-stranded DNA tail

1 reference

12 December 2020

Mapping the conformation of the nucleic acid framework of the T7 RNA polymerase elongation complex in solution using low-energy CD and fluorescence spectroscopy

1 reference

12 December 2020

Structure and dynamics in DNA looped domains: CAG triplet repeat sequence dynamics probed by 2-aminopurine fluorescence

1 reference

12 December 2020

Probing the role of hydrogen bonds in the stability of base pairs in double-helical DNA

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0900803106

1 reference

18 August 2017

0 references

1 reference

18 August 2017

PubMed publication ID

19246398

1 reference