Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals (Q37528693)

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scientific article published on 02 September 2013

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English	Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals	scientific article published on 02 September 2013

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scholarly article

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Europe PubMed Central

PMC publication ID

20 August 2017

Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals (English)

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Europe PubMed Central

PMC publication ID

20 August 2017

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based on heuristic

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Shan Xiao

1

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Europe PubMed Central

PMC publication ID

20 August 2017

Jia-Yu Zhang

2

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Europe PubMed Central

PMC publication ID

20 August 2017

Ke-Wei Zheng

3

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Europe PubMed Central

PMC publication ID

20 August 2017

Yu-Hua Hao

4

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Europe PubMed Central

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20 August 2017

Zheng Tan

5

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Europe PubMed Central

PMC publication ID

20 August 2017

language of work or name

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publication date

2 September 2013

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Europe PubMed Central

PMC publication ID

20 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

20 August 2017

41

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Europe PubMed Central

PMC publication ID

20 August 2017

22

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Europe PubMed Central

PMC publication ID

20 August 2017

10379-10390

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Europe PubMed Central

PMC publication ID

20 August 2017

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Creative Commons Attribution 3.0 Unported

10 November 2016

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April 2022 Public Data File from Crossref

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Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control

1 reference

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23 August 2017

Quantitative visualization of DNA G-quadruplex structures in human cells

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23 August 2017

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis

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Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines

1 reference

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Metazoan promoters: emerging characteristics and insights into transcriptional regulation

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5'-UTR RNA G-quadruplexes: translation regulation and targeting

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Transcription as a source of genome instability

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R-loop-mediated genomic instability is caused by impairment of replication fork progression

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DNA secondary structures and epigenetic determinants of cancer genome evolution

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Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

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G-quadruplex formation at the 3' end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase

1 reference

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G4 motifs correlate with promoter-proximal transcriptional pausing in human genes.

1 reference

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23 August 2017

Mapping the sequences of potential guanine quadruplex motifs

1 reference

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23 August 2017

Structure, location and interactions of G‐quadruplexes

1 reference

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23 August 2017

Making sense of G‐quadruplex and i‐motif functions in oncogene promoters

1 reference

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Mechanisms and implications of transcription blockage by guanine-rich DNA sequences.

1 reference

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Human telomeric G-quadruplex: the current status of telomeric G-quadruplexes as therapeutic targets in human cancer

1 reference

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Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA

1 reference

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Genome-wide colonization of gene regulatory elements by G4 DNA motifs

1 reference

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23 August 2017

G-quadruplex structures: in vivo evidence and function

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CpG islands--'a rough guide'.

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Mechanism and regulation of class switch recombination

1 reference

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Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

1 reference

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23 August 2017

Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription

1 reference

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Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

1 reference

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Cotranscriptional processes and their influence on genome stability.

1 reference

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Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

1 reference

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23 August 2017

Pause sites promote transcriptional termination of mammalian RNA polymerase II

1 reference

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Prevalence of quadruplexes in the human genome

1 reference

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23 August 2017

Highly prevalent putative quadruplex sequence motifs in human DNA

1 reference

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Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

1 reference

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Cell senescence and telomere shortening induced by a new series of specific G-quadruplex DNA ligands.

1 reference

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RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing

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Inhibition of telomerase by G-quartet DNA structures

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Sequence requirements for premature transcription arrest within the first intron of the mouse c-fos gene

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G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription.

1 reference

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MAZ-dependent termination between closely spaced human complement genes

1 reference

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G4-forming sequences in the non-transcribed DNA strand pose blocks to T7 RNA polymerase and mammalian RNA polymerase II.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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25 June 2018

G-quadruplex preferentially forms at the very 3' end of vertebrate telomeric DNA

1 reference

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G-quadruplexes in promoters throughout the human genome

1 reference

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1 reference

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Effect of DNA secondary structure on human telomerase activity

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Extensive selection for the enrichment of G4 DNA motifs in transcriptional regulatory regions of warm blooded animals

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

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Effect of length variations at nucleotide positions 303-315 in human mitochondrial DNA on transcription termination

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G-quadruplex hinders translocation of BLM helicase on DNA: a real-time fluorescence spectroscopic unwinding study and comparison with duplex substrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

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Formation, recognition and bioactivities of a novel G-quadruplex in the STAT3 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

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The influence of transcriptional orientation on endogenous switch region function

1 reference

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Identifiers

10.1093/NAR/GKT781

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

ResearchGate publication ID

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