Molecular dynamics simulation of configurational ensembles compatible with experimental FRET efficiency data through a restraint on instantaneous FRET efficiencies (Q30863691)

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English	Molecular dynamics simulation of configurational ensembles compatible with experimental FRET efficiency data through a restraint on instantaneous FRET efficiencies	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

27 June 2017

Molecular dynamics simulation of configurational ensembles compatible with experimental FRET efficiency data through a restraint on instantaneous FRET efficiencies (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 June 2017

molecular dynamics simulation

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object named as

Maria M Reif

1

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Chris Oostenbrink

object named as

Chris Oostenbrink

2

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publication date

23 October 2014

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Europe PubMed Central

PubMed publication ID

27 June 2017

Journal of Computational Chemistry

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Europe PubMed Central

PubMed publication ID

27 June 2017

35

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Europe PubMed Central

PubMed publication ID

27 June 2017

32

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Europe PubMed Central

PubMed publication ID

27 June 2017

2319-2332

1 reference

Europe PubMed Central

PubMed publication ID

27 June 2017

Zwischenmolekulare Energiewanderung und Fluoreszenz

1 reference

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21 January 2018

Energy transfer: a spectroscopic ruler

1 reference

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Fluorescence Energy Transfer as a Spectroscopic Ruler

1 reference

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Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

1 reference

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FRETView: a computer program to simplify the process of obtaining fluorescence resonance energy transfer parameters

1 reference

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Fluorescence anisotropy of molecular rotors

1 reference

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Effect of aggregation on the photophysical properties of three fluorene-phenylene-based cationic conjugated polyelectrolytes.

1 reference

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FRET or no FRET: a quantitative comparison

1 reference

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Photophysical processes in single molecule organic fluorescent probes

1 reference

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Light-induced flickering of DsRed provides evidence for distinct and interconvertible fluorescent states

1 reference

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21 January 2018

Photobleaching pathways in single-molecule FRET experiments

1 reference

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Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics

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21 January 2018

Detection of dihydrofolate reductase conformational change by FRET using two fluorescent amino acids

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21 January 2018

Time-resolved FRET detection of subtle temperature-induced conformational biases in ensembles of α-synuclein molecules.

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Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

1 reference

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Fluorescence spectroscopy of single biomolecules.

1 reference

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21 January 2018

Single-molecule fluorescence resonance energy transfer

1 reference

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21 January 2018

A practical guide to single-molecule FRET

1 reference

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21 January 2018

Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET

1 reference

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21 January 2018

Transport dynamics in a glutamate transporter homologue.

1 reference

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21 January 2018

Single-molecule FRET reveals the native-state dynamics of the IκBα ankyrin repeat domain

1 reference

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21 January 2018

Decoding the pattern of photon colors in single-molecule FRET.

1 reference

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21 January 2018

Analysis of single-molecule FRET trajectories using hidden Markov modeling

1 reference

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21 January 2018

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein

1 reference

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21 January 2018

Complex RNA folding kinetics revealed by single-molecule FRET and hidden Markov models

1 reference

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21 January 2018

Protein dynamics from single-molecule fluorescence intensity correlation functions

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23756

21 January 2018

Combining experiments and simulations using the maximum entropy principle

1 reference

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21 January 2018

A protein structure from nuclear magnetic resonance data. lac repressor headpiece

1 reference

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21 January 2018

Determination of protein structures from nuclear magnetic resonance data using a restrained molecular dynamics approach: the lac repressor DNA binding domain

1 reference

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21 January 2018

On the statistical equivalence of restrained-ensemble simulations with the maximum entropy method

1 reference

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21 January 2018

Molecular simulation as an aid to experimentalists.

1 reference

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21 January 2018

On the Use of Experimental Observations to Bias Simulated Ensembles

1 reference

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21 January 2018

A new mast cell degranulating peptide "mastoparan" in the venom of Vespula lewisii

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21 January 2018

Orientation and effects of mastoparan X on phospholipid bicelles

1 reference

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21 January 2018

Membrane-bound conformation of mastoparan-X, a G-protein-activating peptide.

1 reference

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21 January 2018

Interaction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers

1 reference

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21 January 2018

Structure of tightly membrane-bound mastoparan-X, a G-protein-activating peptide, determined by solid-state NMR

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21 January 2018

Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study.

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Labeling proteins with fluorophore/thioamide Förster resonant energy transfer pairs by combining unnatural amino acid mutagenesis and native chemical ligation

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21 January 2018

Native state conformational heterogeneity of HP35 revealed by time-resolved FRET.

1 reference

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21 January 2018

Probing the kinetics of membrane-mediated helix folding

1 reference

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21 January 2018

Use of the novel fluorescent amino acid p-cyanophenylalanine offers a direct probe of hydrophobic core formation during the folding of the N-terminal domain of the ribosomal protein L9 and provides evidence for two-state folding

1 reference

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21 January 2018

Probing protein folding using site-specifically encoded unnatural amino acids as FRET donors with tryptophan.

1 reference

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Modulation of p-cyanophenylalanine fluorescence by amino acid side chains and rational design of fluorescence probes of alpha-helix formation

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Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain

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The fluorescent amino acid p-cyanophenylalanine provides an intrinsic probe of amyloid formation

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Sensitivity of amyloid formation by human islet amyloid polypeptide to mutations at residue 20

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

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Photophysics of a Fluorescent Non-natural Amino Acid: p-Cyanophenylalanine

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GROMOS++ Software for the Analysis of Biomolecular Simulation Trajectories

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Molecular dynamics with coupling to an external bath

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FRET detection of amyloid β-peptide oligomerization using a fluorescent protein probe presenting a pseudo-amyloid structure

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New Interaction Parameters for Charged Amino Acid Side Chains in the GROMOS Force Field

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21 January 2018

Identifiers

10.1002/JCC.23756

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Europe PubMed Central

PubMed publication ID

27 June 2017

DBLP publication ID

journals/jcc/ReifO14a

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DBLP Dataset 2021-01-02

28 January 2021

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https://api.fatcat.wiki/v0/release/hvvuqbo7fngn5pu6ld6bxwmriu

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Europe PubMed Central

PubMed publication ID

27 June 2017

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