Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates (Q31144496)

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English	Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates	scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

object named as

Unni Grimholt

2

0 references

author name string

Johannes M Dijkstra

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Jong Leong

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Keiichiro Hashimoto

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

publication date

26 November 2013

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

BMC Evolutionary Biology

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Europe PubMed Central

PMC publication ID

13 October 2017

13

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

260

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Crystal Structure of the HLA-DM–HLA-DR1 Complex Defines Mechanisms for Rapid Peptide Selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

HLA-DO acts as a substrate mimic to inhibit HLA-DM by a competitive mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Conformational variation in structures of classical and non-classical MHCII proteins and functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Organization of Mhc class II A and B genes in the tilapiine fish Oreochromis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The mechanism of HLA-DM induced peptide exchange in the MHC class II antigen presentation pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Conformational lability in the class II MHC 310 helix and adjacent extended strand dictate HLA-DM susceptibility and peptide exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Towards a systems understanding of MHC class I and MHC class II antigen presentation.

1 reference

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21 June 2018

Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex

1 reference

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21 June 2018

The genome sequence of Atlantic cod reveals a unique immune system

1 reference

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21 June 2018

A multipoint hydrogen-bond network underlying KcsA C-type inactivation

1 reference

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21 June 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

HLA-DM captures partially empty HLA-DR molecules for catalyzed removal of peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Cutting edge: HLA-DM functions through a mechanism that does not require specific conserved hydrogen bonds in class II MHC-peptide complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Multiple expressed MHC class II loci in salmonids; details of one non-classical region in Atlantic salmon (Salmo salar)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Major histocompatibility lineages and immune gene function in teleost fishes: the road not taken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Interaction of HLA-DR with an acidic face of HLA-DM disrupts sequence-dependent interactions with peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man.

1 reference

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21 June 2018

Evidence that the separation of Mhc class II from class I loci in the zebrafish, Danio rerio, occurred by translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Identification of the lateral interaction surfaces of human histocompatibility leukocyte antigen (HLA)-DM with HLA-DR1 by formation of tethered complexes that present enhanced HLA-DM catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Determination of the HLA-DM interaction site on HLA-DR molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Primitive synteny of vertebrate major histocompatibility complex class I and class II genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Ab initio gene finding in Drosophila genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The chicken B locus is a minimal essential major histocompatibility complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

pH-dependent peptide binding properties of the type I diabetes-associated I-Ag7 molecule: rapid release of CLIP at an endosomal pH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

MHC class I genes in a New World primate, the cotton-top tamarin (Saguinus oedipus), have evolved by an active process of loci turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Crystal structure of mouse H2-M

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The structure of HLA-DM, the peptide exchange catalyst that loads antigen onto class II MHC molecules during antigen presentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Crystal structure of I-Ak in complex with a dominant epitope of lysozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Prediction of complete gene structures in human genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Enhanced dissociation of HLA-DR-bound peptides in the presence of HLA-DM

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The structure of MHC class II: a role for dimer of dimers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Antigen presentation and T cell development in H2-M-deficient mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Mice lacking H2-M complexes, enigmatic elements of the MHC class II peptide-loading pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Zebrafish Mhc class II alpha chain-encoding genes: polymorphism, expression, and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

HLA-DMA and -DMB genes are both required for MHC class II/peptide complex formation in antigen-presenting cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

An essential role for HLA-DM in antigen presentation by class II major histocompatibility molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

DM enhances peptide binding to class II MHC by release of invariant chain-derived peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

HLA-DM induces clip dissociation from MHC class II αβ dimers and facilitates peptide loading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Mediation by HLA-DM of dissociation of peptides from HLA-DR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

A lysosomal targeting signal in the cytoplasmic tail of the beta chain directs HLA-DM to MHC class II compartments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The MHC class II molecule H2-M is targeted to an endosomal compartment by a tyrosine-based targeting motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

21 June 2018

Isolation of carp genes encoding major histocompatibility complex antigens

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21 June 2018

Identification and characterization of a second CD4-like gene in teleost fish

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

Cloning of two zebrafish cDNAs that share domains with the MHC class II-associated invariant chain

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https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

MHC class II invariant chain homologues in rainbow trout (Oncorhynchus mykiss).

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https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

Evolutionary history of the ABCB2 genomic region in teleosts

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https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

A molecule in teleost fish, related with human MHC-encoded G6F, has a cytoplasmic tail with ITAM and marks the surface of thrombocytes and in some fishes also of erythrocytes

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https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

The properties of the single chicken MHC classical class II alpha chain ( B-LA) gene indicate an ancient origin for the DR/E-like isotype of class II molecules

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

Unique haplotypes of co-segregating major histocompatibility class II A and class II B alleles in Atlantic salmon (Salmo salar) give rise to diverse class II genotypes.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-260

21 January 2018

Ancestral organization of the MHC revealed in the amphibian Xenopus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

31 October 2018

Cloning, expression, and characterization of fugu CD4, the first ectothermic animal CD4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219347

31 October 2018

Mapping of mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio

1 reference

https://pubmed.ncbi.nlm.nih.gov/24279922

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expressed major histocompatibility complex class II loci in fishes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24279922

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternate forms of MHC class II-associated invariant chain are not produced by alternative splicing in rainbow trout (Oncorhynchus mykiss) but are encoded by separate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24279922

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2148-13-260

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-13-260

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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