Improved functional overview of protein complexes using inferred epistatic relationships. (Q33909267)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21605386%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

Improved functional overview of protein complexes using inferred epistatic relationships (English)

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1 February 2020

1

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1 February 2020

Haico van Attikum

4

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1 February 2020

Padraig Cunningham

6

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1 February 2020

Gerard Cagney

7

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5

Nevan J Krogan

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1 February 2020

author name string

Derek Greene

2

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1 February 2020

Aude Guénolé

3

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publication date

23 May 2011

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1 February 2020

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1 February 2020

volume

5

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1 February 2020

page(s)

80

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Missing value imputation for epistatic MAPs

1 February 2020

cites work

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5 July 2018

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Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

5 July 2018

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Functional organization of the S. cerevisiae phosphorylation network

5 July 2018

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Predicting genetic interactions with random walks on biological networks

5 July 2018

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5 July 2018

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A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

5 July 2018

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Mining protein networks for synthetic genetic interactions

5 July 2018

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Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions

5 July 2018

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From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions

5 July 2018

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Functional maps of protein complexes from quantitative genetic interaction data

5 July 2018

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The chemical genomic portrait of yeast: uncovering a phenotype for all genes

5 July 2018

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Regulation of mRNA Translation during cellular division.

5 July 2018

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The BioGRID Interaction Database: 2008 update

5 July 2018

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Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage

5 July 2018

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Integrating physical and genetic maps: from genomes to interaction networks

5 July 2018

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Exploring genetic interactions and networks with yeast

5 July 2018

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Deciphering protein-protein interactions. Part I. Experimental techniques and databases

5 July 2018

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H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state

5 July 2018

1 reference

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Identifying functional modules in the physical interactome of Saccharomyces cerevisiae

5 July 2018

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

5 July 2018

1 reference

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dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae

5 July 2018

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A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

5 July 2018

1 reference

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Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

5 July 2018

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

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Mapping pathways and phenotypes by systematic gene overexpression

5 July 2018

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Proteome survey reveals modularity of the yeast cell machinery

5 July 2018

1 reference

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Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

5 July 2018

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Systematic interpretation of genetic interactions using protein networks

5 July 2018

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Combining biological networks to predict genetic interactions

5 July 2018

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Exploration of essential gene functions via titratable promoter alleles

5 July 2018

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A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length

5 July 2018

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A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin

5 July 2018

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A new enrichment approach identifies genes that alter cell cycle progression in Saccharomyces cerevisiae

5 July 2018

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Global mapping of the yeast genetic interaction network

5 July 2018

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The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.

5 July 2018

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A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

5 July 2018

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ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

5 July 2018

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Global analysis of protein expression in yeast

5 July 2018

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Global analysis of protein localization in budding yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117733

Analyzing yeast protein-protein interaction data obtained from different sources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117733

Functional profiling of the Saccharomyces cerevisiae genome

5 July 2018

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5 July 2018

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Systematic genetic analysis with ordered arrays of yeast deletion mutants

5 July 2018

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

5 July 2018

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Box C/D snoRNA-associated proteins: two pairs of evolutionarily ancient proteins and possible links to replication and transcription

5 July 2018

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Gene ontology: tool for the unification of biology

5 July 2018

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

5 July 2018

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KEGG: kyoto encyclopedia of genes and genomes

5 July 2018

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Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo

5 July 2018

1 reference

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SGD: Saccharomyces Genome Database

5 July 2018

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5 July 2018

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RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae

5 July 2018

1 reference

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Genome-wide prediction of C. elegans genetic interactions

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-5-80

The histones H2A/H2B and H3/H4 are imported into the yeast nucleus by different mechanisms

21 January 2018

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https://api.crossref.org/works/10.1186%2F1752-0509-5-80

Modular epistasis in yeast metabolism.

21 January 2018

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29 October 2018

Identifiers

DOI

10.1186/1752-0509-5-80

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21605386%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcsb/RyanGGAKCC11

1 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21605386%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

21605386

1 reference