Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis (Q33673465)

28 July 2017

title

Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis (English)

1 reference

alternative mRNA splicing, via spliceosome

28 July 2017

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1 reference

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4

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28 July 2017

5

Chung-Mo Park

1 reference

28 July 2017

Young-Ju Kwon

1

1 reference

28 July 2017

Mi-Jeong Park

series ordinal

2

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28 July 2017

Sang-Gyu Kim

series ordinal

3

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28 July 2017

publication date

19 May 2014

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28 July 2017

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28 July 2017

volume

14

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28 July 2017

page(s)

136

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Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay

28 July 2017

cites work

1 reference

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21 June 2018

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Transcriptional repressor PRR5 directly regulates clock-output pathways

21 June 2018

1 reference

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Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes

21 June 2018

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21 June 2018

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Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes

21 June 2018

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The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

21 June 2018

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A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants

21 June 2018

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Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response

21 June 2018

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Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

21 June 2018

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Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

21 June 2018

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21 June 2018

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Molecular mechanisms underlying the Arabidopsis circadian clock

21 June 2018

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The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth

21 June 2018

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21 June 2018

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Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis.

21 June 2018

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Characterization of abiotic stress-responsive Arabidopsis thaliana RD29A and RD29B genes and evaluation of transgenes

21 June 2018

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Abiotic stress and the plant circadian clock

21 June 2018

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The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis

21 June 2018

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More than taking the heat: crops and global change

21 June 2018

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PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock

21 June 2018

1 reference

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PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock.

21 June 2018

1 reference

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Genome-wide mapping of alternative splicing in Arabidopsis thaliana

21 June 2018

1 reference

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Arabidopsis circadian clock and photoperiodism: time to think about location

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

The circadian system in higher plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Nonsense-mediated mRNA decay (NMD) mechanisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

21 June 2018

1 reference

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Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Mechanisms of salinity tolerance

21 June 2018

1 reference

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Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

HD-ZIP III activity is modulated by competitive inhibitors via a feedback loop in Arabidopsis shoot apical meristem development

21 June 2018

1 reference

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The coupling of alternative splicing and nonsense-mediated mRNA decay.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Structural genomics analysis of alternative splicing and application to isoform structure modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Input signals to the plant circadian clock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Direct targeting of light signals to a promoter element-bound transcription factor.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

CIRCADIAN CLOCK ASSOCIATED1 transcript stability and the entrainment of the circadian clock in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

A method for the absolute quantification of cDNA using real-time PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

PRR3 Is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Eleven golden rules of quantitative RT-PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Transcriptional variation in response to salt stress in commonly used Arabidopsis thaliana accessions

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035800

Overlapping and Distinct Roles of PRR7 and PRR9 in the Arabidopsis Circadian Clock

30 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-136

Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24885185

12 December 2020

inferred from PubMed ID database lookup

UPF3 suppresses aberrant spliced mRNA in Arabidopsis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24885185

12 December 2020

inferred from PubMed ID database lookup

Multiple phytohormones influence distinct parameters of the plant circadian clock

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24885185

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2229-14-136

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qpyjyjcu4vdhdm7hdrzl2dufhq

30 July 2022

Dimensions Publication ID

1025691930

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Fatcat ID

release_qpyjyjcu4vdhdm7hdrzl2dufhq

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Fatcat

https://api.fatcat.wiki/v0/release/qpyjyjcu4vdhdm7hdrzl2dufhq

30 July 2022

https://api.fatcat.wiki/v0/release/qpyjyjcu4vdhdm7hdrzl2dufhq

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/qpyjyjcu4vdhdm7hdrzl2dufhq

1 reference

30 July 2022