RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. (Q35597360)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25957685%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity (English)

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7 March 2020

0 references

2

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7 March 2020

David Kazadi

5

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7 March 2020

Jianbo Sun

6

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7 March 2020

Alexander J Federation

7

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7 March 2020

Aris Economides

11

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7 March 2020

Raúl Rabadán

13

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7 March 2020

author name string

Evangelos Pefanis

1

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7 March 2020

Gerson Rothschild

3

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7 March 2020

Junghyun Lim

4

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7 March 2020

Jaime Chao

8

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7 March 2020

Oliver Elliott

9

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7 March 2020

Zhi-Ping Liu

10

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7 March 2020

James E Bradner

12

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7 March 2020

Uttiya Basu

14

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7 March 2020

language of work or name

English

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publication date

1 May 2015

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7 March 2020

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7 March 2020

volume

161

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7 March 2020

issue

4

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7 March 2020

page(s)

774-789

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RNA-processing proteins regulate Mec1/ATR activation by promoting generation of RPA-coated ssDNA

7 March 2020

cites work

1 reference

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B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity

27 July 2018

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Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability

27 July 2018

1 reference

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Roadblock termination by reb1p restricts cryptic and readthrough transcription.

27 July 2018

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R-loops induce repressive chromatin marks over mammalian gene terminators

27 July 2018

1 reference

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Regulation of transcription by long noncoding RNAs

27 July 2018

1 reference

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Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.

27 July 2018

1 reference

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Structure of an Rrp6–RNA exosome complex bound to poly(A) RNA

27 July 2018

1 reference

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Epigenetic Regulation of Individual Modules of the immunoglobulin heavy chain locus 3' Regulatory Region

27 July 2018

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Enhancer RNAs and regulated transcriptional programs

27 July 2018

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An atlas of active enhancers across human cell types and tissues

27 July 2018

1 reference

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Why does somatic hypermutation by AID require transcription of its target genes?

27 July 2018

1 reference

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lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.

27 July 2018

1 reference

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Multiple knockout mouse models reveal lincRNAs are required for life and brain development

27 July 2018

1 reference

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Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma.

27 July 2018

1 reference

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Super-enhancers in the control of cell identity and disease

27 July 2018

1 reference

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Conditionals by inversion provide a universal method for the generation of conditional alleles

27 July 2018

1 reference

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Transcriptional stalling in B-lymphocytes: a mechanism for antibody diversification and maintenance of genomic integrity

27 July 2018

1 reference

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Selective inhibition of tumor oncogenes by disruption of super-enhancers

27 July 2018

1 reference

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

27 July 2018

1 reference

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The role of the Arabidopsis Exosome in siRNA-independent silencing of heterochromatic loci.

27 July 2018

1 reference

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RPA accumulation during class switch recombination represents 5'-3' DNA-end resection during the S-G2/M phase of the cell cycle

27 July 2018

1 reference

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Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination

27 July 2018

1 reference

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Genome-wide measurement of RNA folding energies

27 July 2018

1 reference

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Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel.

27 July 2018

1 reference

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Genome regulation by long noncoding RNAs.

27 July 2018

1 reference

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Transcription as a source of genome instability

27 July 2018

1 reference

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Genome-wide structure and organization of eukaryotic pre-initiation complexes

27 July 2018

1 reference

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Active chromatin and noncoding RNAs: an intimate relationship

27 July 2018

1 reference

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Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes

27 July 2018

1 reference

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lincRNAs act in the circuitry controlling pluripotency and differentiation

27 July 2018

1 reference

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The IgH locus 3' regulatory region: pulling the strings from behind

27 July 2018

1 reference

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Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome

27 July 2018

1 reference

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Different nuclease requirements for exosome-mediated degradation of normal and nonstop mRNAs

27 July 2018

1 reference

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The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates

27 July 2018

1 reference

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

27 July 2018

1 reference

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Divergent transcription: a new feature of active promoters

27 July 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

RNA exosome depletion reveals transcription upstream of active human promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

The exosome: a multipurpose RNA-decay machine

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Reconstitution, activities, and structure of the eukaryotic RNA exosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

RRP6/EXOSC10 is required for the repair of DNA double-strand breaks by homologous recombination.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Nuclear stability and transcriptional directionality separate functionally distinct RNA species

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.

26 September 2018

1 reference

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E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells.

26 September 2018

1 reference

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RNA decay machines: the exosome

26 September 2018

1 reference

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Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast

26 September 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

26 September 2018

1 reference

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Transcription termination by nuclear RNA polymerases

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Origins and activities of the eukaryotic exosome.

26 September 2018

1 reference

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Tiny RNAs associated with transcription start sites in animals.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

Divergent transcription from active promoters

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

RNA maps reveal new RNA classes and a possible function for pervasive transcription

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428671

RNA-quality control by the exosome

26 September 2018

1 reference

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RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

26 September 2018

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKS540

1 reference

14 August 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKS1236

1 reference

14 August 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKT1196

Identifiers

DOI

10.1016/J.CELL.2015.04.034

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25957685%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25957685%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

25957685

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25957685%20AND%20SRC:MED&resulttype=core&format=json