Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for sequence-specific transactivators (Q33226324)

24 July 2017

title

Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for sequence-specific transactivators (English)

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24 July 2017

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Jennifer A. Pietenpol

6

object named as

Jennifer A Pietenpol

1 reference

24 July 2017

Jamie M Hearnes

1

1 reference

24 July 2017

Deborah J Mays

2

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24 July 2017

Kristy L Schavolt

3

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24 July 2017

Luojia Tang

4

1 reference

24 July 2017

Xin Jiang

5

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24 July 2017

language of work or name

English

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publication date

1 November 2005

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Molecular and Cellular Biology

24 July 2017

published in

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24 July 2017

volume

25

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24 July 2017

issue

22

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24 July 2017

page(s)

10148-10158

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The p53 response: emerging levels of co-factor complexity.

24 July 2017

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Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.

14 July 2018

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SUMO and ubiquitin in the nucleus: different functions, similar mechanisms?

14 July 2018

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Genomic approaches that aid in the identification of transcription factor target genes.

14 July 2018

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Targeting endothelin axis in cancer.

14 July 2018

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The ubiquitin ligase COP1 is a critical negative regulator of p53

14 July 2018

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The common and distinct target genes of the p53 family transcription factors

14 July 2018

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CREB binds to multiple loci on human chromosome 22.

14 July 2018

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Siah-1b is a direct transcriptional target of p53: identification of the functional p53 responsive element in the siah-1b promoter

14 July 2018

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

14 July 2018

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Isolation of p53-target genes and their functional analysis

14 July 2018

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Complete sequencing and characterization of 21,243 full-length human cDNAs

14 July 2018

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Disruption of the nucleolus mediates stabilization of p53 in response to DNA damage and other stresses

14 July 2018

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p53 Functions through Stress- and Promoter-Specific Recruitment of Transcription Initiation Components before and after DNA Damage

14 July 2018

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Distribution of NF-kappaB-binding sites across human chromosome 22

14 July 2018

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Dual-specificity phosphatase 5 (DUSP5) as a direct transcriptional target of tumor suppressor p53

14 July 2018

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Analysis of Myc bound loci identified by CpG island arrays shows that Max is essential for Myc-dependent repression

14 July 2018

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Transcriptional repression mediated by the p53 tumour suppressor

14 July 2018

1 reference

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PAC1 phosphatase is a transcription target of p53 in signalling apoptosis and growth suppression

14 July 2018

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Pirh2, a p53-induced ubiquitin-protein ligase, promotes p53 degradation

14 July 2018

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The Delta Np63 alpha phosphoprotein binds the p21 and 14-3-3 sigma promoters in vivo and has transcriptional repressor activity that is reduced by Hay-Wells syndrome-derived mutations

14 July 2018

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A novel protein phosphatase 2C family member (PP2Czeta) is able to associate with ubiquitin conjugating enzyme 9

14 July 2018

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The transcriptional activity of human Chromosome 22

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 is a chromatin accessibility factor for nucleotide excision repair of DNA damage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags

14 July 2018

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Endothelin-2 is a macrophage chemoattractant: implications for macrophage distribution in tumors

14 July 2018

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The p53MH algorithm and its application in detecting p53-responsive genes

14 July 2018

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Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method

14 July 2018

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Large-scale transcriptional activity in chromosomes 21 and 22

14 July 2018

1 reference

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Using the transcriptome to annotate the genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 Binds and activates the xeroderma pigmentosum DDB2 gene in humans but not mice.

14 July 2018

1 reference

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GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

14 July 2018

1 reference

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E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints

14 July 2018

1 reference

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Regulation of PTEN transcription by p53

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Controlling the efficiency of excision repair

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Kinetics of p53 binding to promoter sites in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 induction of heparin-binding EGF-like growth factor counteracts p53 growth suppression through activation of MAPK and PI3K/Akt signaling cascades

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 Signaling and cell cycle checkpoints

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

The Sequence of the Human Genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53-inducible wip1 phosphatase mediates a negative feedback regulation of p38 MAPK-p53 signaling in response to UV radiation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

MCG10, a novel p53 target gene that encodes a KH domain RNA-binding protein, is capable of inducing apoptosis and cell cycle arrest in G(2)-M

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Identification of Ankrd2, a novel skeletal muscle gene coding for a stretch-responsive ankyrin-repeat protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 regulation of G(2) checkpoint is retinoblastoma protein dependent

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

PDGF-C is a new protease-activated ligand for the PDGF alpha-receptor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Analysis of p53-regulated gene expression patterns using oligonucleotide arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Identification and classification of p53-regulated genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Disruption of p53 in human cancer cells alters the responses to therapeutic agents

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Regulation of p53 downstream genes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA degradation triggered by genotoxic stress

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Differential cell cycle checkpoint response in normal human keratinocytes and fibroblasts.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

A simplified system for generating recombinant adenoviruses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Transcriptional activation by p53 of the human type IV collagenase (gelatinase A or matrix metalloproteinase 2) promoter

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

In vivo evidence for binding of p53 to consensus binding sites in the p21 and GADD45 genes in response to ionizing radiation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Wip1, a novel human protein phosphatase that is induced in response to ionizing radiation in a p53-dependent manner

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Regulation of p53 stability by Mdm2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Mdm2 promotes the rapid degradation of p53

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Wild-type but not mutant p53 activates the hepatocyte growth factor/scatter factor promoter

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Transcriptional activation of the human epidermal growth factor receptor promoter by human p53.

14 July 2018

1 reference

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WAF1, a potential mediator of p53 tumor suppression

14 July 2018

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p53 tagged sites from human genomic DNA.

14 July 2018

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Topological control of p21WAF1/CIP1 expression in normal and neoplastic tissues

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

A functional p53-responsive intronic promoter is contained within the humanmdm2gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

p53 Stimulates Transcription from the Human Transforming Growth Factor α Promoter: a Potential Growth-Stimulatory Role for p53

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Coding sequence of human rho cDNAs clone 6 and clone 9

14 July 2018

1 reference

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Distinctive traits of normal and tumor-derived human mammary epithelial cells expressed in a medium that supports long-term growth of both cell types

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Identification of p53 as a sequence-specific DNA-binding protein

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Identification of the DNA binding site for NGFI-B by genetic selection in yeast

14 July 2018

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Human p53 and CDC2Hs genes combine to inhibit the proliferation of Saccharomyces cerevisiae

14 July 2018

1 reference

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Definition of a consensus binding site for p53

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Loss of p53 has site-specific effects on histone H3 modification, including serine 10 phosphorylation important for maintenance of ploidy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1280257

Groups of p53 target genes involved in specific p53 downstream effects cluster into different classes of DNA binding sites

31 October 2018

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12 December 2020

Blockage of RNA polymerase as a possible trigger for u.v. light-induced apoptosis

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12 December 2020

Endothelin-2 is a hypoxia-induced autocrine survival factor for breast tumor cells

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12 December 2020

U.v.-induced nuclear accumulation of p53 is evoked through DNA damage of actively transcribed genes independent of the cell cycle

1 reference

12 December 2020

10.1128/MCB.25.22.10148-10158.2005

Identifiers

DOI

1 reference

24 July 2017

1 reference

24 July 2017

1 reference