Theoretical analysis of noncanonical base pairing interactions in RNA molecules (Q59389083)

From Wikidata

Jump to navigation Jump to search

scientific article published on 01 August 2007

edit

Language	Label	Description	Also known as
English	Theoretical analysis of noncanonical base pairing interactions in RNA molecules	scientific article published on 01 August 2007

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

title

Theoretical analysis of noncanonical base pairing interactions in RNA molecules (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

main subject

RNA analysis

1 reference

based on heuristic

inferred from title

author

Abhijit Mitra

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

author name string

Dhananjay Bhattacharyya

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

Siv Chand Koripella

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

Vijay Babu Rajendran

series ordinal

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

Bhabdyuti Sinha

series ordinal

5

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

publication date

1 August 2007

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

published in

Journal of Biosciences

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

volume

32

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

issue

5

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

page(s)

809-825

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

cites work

Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of hydrogen bonds in protein-DNA recognition: effect of nonplanar amino groups

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tools for the automatic identification and classification of RNA base pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base-pairs in an RNA duplex

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural elements of dynamic RNA strings

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a hepatitis delta virus ribozyme

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geometric nomenclature and classification of RNA base pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The transition from a neutral-pH double helix to a low-pH triple helix induces a conformational switch in the CCCG tetraloop closing a Watson-Crick stem

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molden: a pre- and post-processing program for molecular and electronic structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A detailed view of a ribosomal active site: the structure of the L11-RNA complex

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the 30S ribosomal subunit

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-Watson−Crick Base Pairing in RNA. Quantum Chemical Analysis of the cis Watson−Crick/Sugar Edge Base Pair Family

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA structure: reading the ribosome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of yeast phenylalanine tRNA at 3 Å resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5' end

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-Watson-Crick base pairs in RNA-protein recognition

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vienna RNA secondary structure server

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recent changes to RasMol, recombining the variants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA sequence analysis using covariance models

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA folding: beyond Watson-Crick pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The non-Watson-Crick base pairs and their associated isostericity matrices

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the ribosome at 5.5 A resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Secondary structure formation during RNA synthesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-transcriptional folding is encoded within RNA genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Principles of RNA Base Pairing: Structures and Energies of the Trans Watson−Crick/Sugar Edge Base Pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of transcription on folding of the Tetrahymena ribozyme

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNABase: an annotated database of RNA structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a lead-dependent ribozyme revealing metal binding sites relevant to catalysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Atomic structures at last: the ribosome in 2000.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NCIR: a database of non-canonical interactions in known RNA structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Post Hartree-Fock studies of the canonical Watson-Crick DNA base pairs: molecular structure and the nature of stability

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA folding at elementary step resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non–coding RNA genes and the modern RNA world

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pfold: RNA secondary structure prediction using stochastic context-free grammars

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RASMOL: biomolecular graphics for all

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-Watson Crick base pairs might stabilize RNA structural motifs in ribozymes — a comparative study of group-I intron structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction energy contributions of H-bonded and stacked structures of the AT and GC DNA base pairs from the combined density functional theory and intermolecular perturbation theory approach

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extracting stacking interaction parameters for RNA from the data set of native structures

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17914224

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of life: The RNA world

1 reference

stated in

COCI

retrieved

4 November 2023

reference URL

https://opencitations.net/index/coci/api/v1/citations/10.1038/319618A0

Identifiers

DOI

10.1007/S12038-007-0082-4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

PubMed publication ID

17914224

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17914224

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17914224%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q59389083&oldid=2215397527"